Hamaker, T.L., Tompkins, M.R., Mengel, D., and M. Brenner. 2000. Best Slough realignment and restoration, Beale Air Force Base, California, United States of America. Proceedings from the Society for Ecological Restoration 2000 Annual Meeting.

Hamaker, T.L., Tompkins, M.R., Mengel, D., and M. O’Brien. 2002. Channel realignment and bank revegetation enhance fish habitat at Best Slough (California). Ecological Restoration 19:4 pages 257-258. University of Wisconsin Press. Madison, Wisconsin.

Mengel, D., Tompkins, M.R., and M. Brenner. 2000. Riparian area remediation: Best Slough realignment and restoration, Beale AFB, California. Proceedings from the American Water Resources Association 2000 Riparian Restoration Conference.

Schaeffer, Martin, J.A., Brent, R.N., Hauser, T., and M.R. Tompkins. 1998. Effects of barge traffic on mussels in the Upper Mississippi River system. Technical Report prepared for the U.S. Army Corps of Engineers, St. Louis, Missouri.

Tompkins, M.R. and E.E. Herricks. 2003. PHABSIM analysis of a straight trapezoidal reach and a highly sinuous reach in a low-order agricultural stream in the midwest. In Lamb, B.L., D. Garcia de Jalon, C. Sabaton, Y. Souchon, N. Tamai, H.R. Robinette, J. Waddle, and A. Brinson, Editors. Proceedings from the 2003 International IFIM Users Workshop. Fort Collins, Colorado, USA.

Tompkins, M.R. and M. O’Brien. 2001. A process-based restoration of Best Slough at Beale Air Force Base. Presentation at the 35^th Annual Meeting of the Cal-Neva Chapter of the American Fisheries Society. Santa Rosa, California.

Tompkins, M.R. and G.M. Kondolf. 2001. Integrating Geomorphic Process Approach in Riparian and Stream Restoration: Past Experience and Future Opportunities.  In Farber, P.M. (ed.). 2003. California Riparian Systems: Processes and Floodplains Management, Ecology, and Restoration. 2001 Riparian Habitat and Floodplains Conference Proceedings, riparian Habitat Joint Venture, Sacramento, CA.

Tompkins, M.R. 1999. PHABSIM analysis of a straight trapezoidal reach and a naturally meandering reach in the Midwest. Presentation at the 33^rd Annual Meeting of the Cal-Neva Chapter of the American Fisheries Society. Redding, California.

Tompkins, M.R. 1998. Analysis of the fisheries in maintained streams using the PHABSIM model and a habitat driven population model. University of Illinois at Urbana-Champaign Masters Thesis. Champaign, Illinois.